Here is a list of all documented struct and union fields with links to the struct/union documentation for each field:

- s -

• sAddProp() : PhiPsi , PhiPsiOmega , PhiPsiOmegaChi1Chi2 , PhiPsiOmegaChi1Chi2PreAngle , PhiPsiOmegaPreAngle , PhiPsiPreAngle
• save() : Spacer , RamachandranData
• saveAminoAcid() : IntSaver , PdbSaver , RelSaver , XyzSaver
• saveClustal() : AlignmentBase
• saveFasta() : Alignment , AlignmentBase
• saveGroup() : IntSaver , PdbSaver , RelSaver , XyzSaver
• saveLigand() : IntSaver , PdbSaver
• saveLigandSet() : PdbSaver
• saveMSAF() : Alignment
• saveProtein() : PdbSaver
• saveSideChain() : IntSaver , PdbSaver , RelSaver , XyzSaver
• saveSpacer() : IntSaver , PdbSaver , XyzSaver
• score() : PssmInput , Ss2Input , Substitution , ThreadingInput
• scoring() : ScoringP2P , ScoringP2S , ScoringS2S , ScoringScheme
• ScoringFunction() : ScoringFunction
• ScoringP2P() : ScoringP2P
• ScoringP2S() : ScoringP2S
• ScoringS2S() : ScoringS2S
• ScoringScheme() : ScoringScheme
• scoringSeq() : AtchleyCorrelation , AtchleyDistance , CrossProduct , DotPFreq , DotPOdds , EDistance , JensenShannon , LogAverage , Panchenko , Pearson , ScoringFunction , Zhou
• scoringStr() : Prof , Sec , Ss2 , Structure , Threading , ThreadingProf , ThreadingSs2
• Sec() : Sec
• SecSequenceData() : SecSequenceData
• selectOccurrence() : LoopTable
• seq : Profile
• SeqDivergenceProfile() : SeqDivergenceProfile
• seqLen : Profile
• seqTemplate : AlignmentBase
• seqTemplateName : AlignmentBase
• SequenceData() : SequenceData
• setAllowGaps() : Profile
• setArcStep() : PhiPsi , PhiPsiOmega , PhiPsiOmegaChi1Chi2 , PhiPsiOmegaChi1Chi2PreAngle , PhiPsiOmegaPreAngle , PhiPsiPreAngle
• setAtomStartOffset() : Spacer
• setBackboneRef() : SideChain
• setBondAngle() : IntCoordConverter
• setBonds() : AminoAcid , IntLoader , PdbLoader
• setBondsFromPdbCode() : AminoAcid , SideChain
• setChi() : SideChain
• setCoords() : Atom
• setDefault() : AminoAcid
• setDSSP() : Spacer
• setEvalue() : Alignment
• setExtensionPenalty() : AGPFunction , GapFunction , VGPFunction2 , VGPFunction
• setFrequency() : Profile
• setHydrogen() : AminoAcidHydrogen
• setLength() : LoopTable
• setMaxInBonds() : SimpleBond
• setMaxOutBonds() : SimpleBond
• setModified() : Atom
• setName() : Identity
• setNumber() : Identity
• setNumGap() : Profile
• setNumSequences() : Profile
• setOffset() : AtchleyCorrelation , AtchleyDistance , EDistance
• setOmega() : AminoAcid
• setOpenPenalty() : AGPFunction , GapFunction , VGPFunction2 , VGPFunction
• setPenalties() : Align
• setPhi() : AminoAcid
• setProfile() : Profile
• setPsi() : AminoAcid
• setRama() : LoopTable
• setRange_Omega() : PhiPsiOmega , PhiPsiOmegaChi1Chi2 , PhiPsiOmegaChi1Chi2PreAngle , PhiPsiOmegaPreAngle
• setRot() : Spacer
• setScore() : Alignment
• setSeq() : Profile
• setSequence() : SecSequenceData , SequenceData
• setSideChain() : AminoAcid
• setSpacer() : LoopExtractor
• setStartOffset() : Spacer
• setStateFromSecondary() : Spacer
• setStateFromTorsionAngles() : AminoAcid , Spacer
• setTarget() : AlignmentBase
• setTargetAminoAcidOffset() : AlignmentBase
• setTargetPos() : AlignmentBase
• setTemplate() : Alignment , AlignmentBase
• setTemplateAminoAcidOffset() : AlignmentBase
• setTemplatePos() : AlignmentBase
• setToOrigin() : LoopTableEntry
• setTorsionAngle() : IntCoordConverter
• setToSingleAminoAcid() : LoopTable , LoopTableEntry
• setTrans() : Spacer
• setType() : AminoAcid , Atom , Nucleotide , SimpleBond
• setUnModified() : Atom
• sGetPropBin() : PhiPsi , PhiPsiOmega , PhiPsiOmegaChi1Chi2 , PhiPsiOmegaChi1Chi2PreAngle , PhiPsiOmegaPreAngle , PhiPsiPreAngle
• sGetPropBin2() : PhiPsiOmegaChi1Chi2PreAngle , PhiPsiOmegaPreAngle , PhiPsiPreAngle
• sGetPropBinDiff() : PhiPsi
• sGetPropChiBin() : PhiPsiOmegaChi1Chi2 , PhiPsiOmegaChi1Chi2PreAngle , PhiPsiOmegaChi1PreAngle
• sGetPropOmegaBin() : PhiPsiOmega , PhiPsiOmegaChi1Chi2 , PhiPsiOmegaChi1Chi2PreAngle , PhiPsiOmegaPreAngle
• shiftMatchSubset() : Align , AlignmentBase
• showDistribution() : LoopTable
• showFeatures() : EnergyFeatures
• similar() : AlignmentData
• SimpleBond() : SimpleBond
• size() : AlignmentBase , ProfInput , PssmInput , Ss2Input , SubMatrix , ThreadingInput , LoopTable
• sizeAmino() : Spacer
• sizeInBonds() : SimpleBond
• sizeOpenInBonds() : Bond
• sizeOpenOutBonds() : Bond
• sizeOutBonds() : SimpleBond
• sizeSpacer() : Spacer
• SolvationPotential() : SolvationPotential
• Spacer() : Spacer
• splitSpacer() : Spacer
• ss : Align
• Ss2() : Ss2
• Ss2Input() : Ss2Input
• startAaTarget : AlignmentBase
• startAaTemplates : AlignmentBase
• store() : LoopTable
• str : ScoringScheme
• Structure() : Structure
• sub : ScoringScheme
• SubMatrix() : SubMatrix
• Substitution() : Substitution
• subStr : Structure
• SWAlign() : SWAlign
• swapTemplate() : Alignment , AlignmentBase
• sync() : AminoAcid , Atom , Group , Nucleotide , Spacer