Calculate scores for profile to profile alignment using euclidean distance. More...

Inheritance diagram for EDistance:

Collaboration diagram for EDistance:

Public Member Functions
	EDistance (Profile pro1, Profile pro2)
	Default constructor. More...

	EDistance (Profile pro1, Profile pro2, double offset)
	Constructor assigning offset. More...

	EDistance (const EDistance &orig)
	Copy constructor. More...

virtual	~EDistance ()
	Destructor.

virtual void	copy (const EDistance &orig)
	Copy orig object to this object ("deep copy"). More...

virtual void	copy (const ScoringFunction &orig)
	Copy orig object to this object ("deep copy").

virtual double	getOffset ()
	Return offset.

virtual EDistance *	newCopy ()
	Construct a new "deep copy" of this object. More...

EDistance &	operator= (const EDistance &orig)
	Assignment operator. More...

virtual double	scoringSeq (int i, int j)
	Calculate scores to create matrix values. More...

virtual void	setOffset (double off)
	Set offset.

Detailed Description

Calculate scores for profile to profile alignment using euclidean distance.

Constructor & Destructor Documentation

Default constructor.

Parameters

pro1
pro2

Constructor assigning offset.

Parameters

EDistance ( const EDistance & orig )

Copy constructor.

Parameters

orig

void copy ( const EDistance & orig )

virtual

Copy orig object to this object ("deep copy").

Parameters

orig

EDistance * newCopy ( )

virtual

Construct a new "deep copy" of this object.

EDistance & operator= ( const EDistance & orig )

Assignment operator.

Parameters

orig

virtual

Calculate scores to create matrix values.

Parameters

i
j

The documentation for this class was generated from the following files: