Base class for scoring functions. More...

Inheritance diagram for ScoringFunction:

Public Member Functions
	ScoringFunction ()
	Default constructor.

	ScoringFunction (const ScoringFunction &orig)
	Copy constructor.

virtual	~ScoringFunction ()
	Destructor.

virtual void	copy (const ScoringFunction &orig)
	Copy orig object to this object ("deep copy").

virtual ScoringFunction *	newCopy ()=0
	Construct a new "deep copy" of this object.

ScoringFunction &	operator= (const ScoringFunction &orig)
	Assignment operator.

virtual double	scoringSeq (int i, int j)=0
	Calculate scores to create matrix values.

Detailed Description

Base class for scoring functions.

The documentation for this class was generated from the following file:

Public Member Functions