Base class for structural scores. More...

Inheritance diagram for Structure:

Collaboration diagram for Structure:

Public Member Functions
	Structure (SubMatrix *subStr)
	Default constructor.

	Structure (const Structure &orig)
	Copy constructor.

virtual	~Structure ()
	Destructor.

virtual void	copy (const Structure &orig)
	Copy orig object to this object ("deep copy").

virtual Structure *	newCopy ()=0
	Construct a new "deep copy" of this object.

Structure &	operator= (const Structure &orig)
	Assignment operator.

virtual void	reverse ()
	Reverse template structural components.

virtual double	scoringStr (int i, int j)=0
	Calculate scores to create matrix values.

Data Fields
SubMatrix *	subStr
	Structural substitution matrix.

Detailed Description

Base class for structural scores.

The documentation for this class was generated from the following file:

Public Member Functions