Calculate structural scores with info derived from PHD. More...

Inheritance diagram for Prof:

Collaboration diagram for Prof:

Public Member Functions
	Prof (SubMatrix subStr, ProfInput phd1, ProfInput *phd2, double cPrf)
	Default constructor. More...

	Prof (const Prof &orig)
	Copy constructor.

virtual	~Prof ()
	Destructor.

virtual void	copy (const Prof &orig)
	Copy orig object to this object ("deep copy"). More...

virtual void	copy (const Structure &orig)
	Copy orig object to this object ("deep copy").

virtual Prof *	newCopy ()
	Construct a new "deep copy" of this object. More...

Prof &	operator= (const Prof &orig)
	Assignment operator. More...

virtual void	reverse ()
	Reverse template structural components.

virtual double	scoringStr (int i, int j)
	Calculate structural scores to create matrix values. More...

Data Fields
SubMatrix *	subStr
	Structural substitution matrix.

Detailed Description

Calculate structural scores with info derived from PHD.

Constructor & Destructor Documentation

Default constructor.

Parameters

void copy ( const Prof & orig )

virtual

Copy orig object to this object ("deep copy").

Parameters

orig

Prof * newCopy ( )

virtual

Construct a new "deep copy" of this object.

Implements Structure.

Prof & operator= ( const Prof & orig )

Assignment operator.

Parameters

orig

virtual

Calculate structural scores to create matrix values.

Parameters

i
j

Implements Structure.

The documentation for this class was generated from the following files: