ProfInput Class Reference

Implement I/O objects for handling PHD files. More...

Public Member Functions
	ProfInput ()
	Default constructor.
	ProfInput (istream &is)
	istream constructor.
	ProfInput (const ProfInput &orig)
	Copy constructor.
virtual	~ProfInput ()
	Destructor.
virtual void	copy (const ProfInput &orig)
	Copy orig object to this object ("deep copy"). More...
char	getProfBE (int i)
	Return the ASA prediction of Prof.
char	getProfMixSSBE (char ssChar, char beChar)
	Return the charachter for SSE/ASA combination. More...
char	getProfSS (int i)
	Return the SSE prediction of Prof.
virtual ProfInput *	newCopy ()
	Construct a new "deep copy" of this object. More...
ProfInput &	operator= (const ProfInput &orig)
	Assignment operator. More...
virtual unsigned int	size () const
	Return the size of the object referred as the number of aminoacids.

Static Public Member Functions
static void	pReadString (istream &is, string &data1, string &data2, string &data3)
	Helper function used to read a string construct. More...
static void	pWriteString (ostream &os, string data1, string data2, string data3)
	Helper function used to write a string construct. More...

Friends
ostream &	operator<< (ostream &os, const ProfInput &object)
	Output operator. More...
istream &	operator>> (istream &is, ProfInput &object)
	Input operator. More...

Detailed Description

Implement I/O objects for handling PHD files.

Member Function Documentation

void copy ( const ProfInput &  orig )

virtual

Copy orig object to this object ("deep copy").

Parameters

orig

char getProfMixSSBE	(	char	ssChar,
		char	beChar
	)

Return the charachter for SSE/ASA combination.

Parameters

ssChar
beChar

Returns

ProfInput * newCopy ( )

virtual

Construct a new "deep copy" of this object.

Returns

ProfInput & operator=

(

const ProfInput &

orig

)

Assignment operator.

Parameters

orig

Returns

void pReadString ( istream &  is, string &  data1, string &  data2, string &  data3  )

static

Helper function used to read a string construct.

Parameters

is
data1
data2
data3

void pWriteString ( ostream &  os, string  data1, string  data2, string  data3  )

static

Helper function used to write a string construct.

Parameters

os
data1
data2
data3

Friends And Related Function Documentation

ostream& operator<< ( ostream &  os, const ProfInput &  object  )

friend

Output operator.

Parameters

os
object

Returns

istream& operator>> ( istream &  is, ProfInput &  object  )

friend

Input operator.

Parameters

is
object

Returns

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The documentation for this class was generated from the following files:

• Align2/Sources/ProfInput.h
• Align2/Sources/ProfInput.cc