Calculate structural scores with info derived from PSI-PRED. More...

Inheritance diagram for Ss2:

Collaboration diagram for Ss2:

Public Member Functions
	Ss2 (SubMatrix subStr, AlignmentData ad, Ss2Input psipred1, Ss2Input psipred2, double cSs2)
	Default constructor.

	Ss2 (const Ss2 &orig)
	Copy constructor.

virtual	~Ss2 ()
	Destructor.

virtual void	copy (const Ss2 &orig)
	Copy orig object to this object ("deep copy"). More...

virtual void	copy (const Structure &orig)
	Copy orig object to this object ("deep copy").

virtual Ss2 *	newCopy ()
	Construct a new "deep copy" of this object. More...

Ss2 &	operator= (const Ss2 &orig)
	Assignment operator.

virtual void	reverse ()
	Reverse template secondary structure.

virtual double	scoringStr (int i, int j)
	Calculate structural scores to create matrix values. More...

Data Fields
SubMatrix *	subStr
	Structural substitution matrix.

Detailed Description

Calculate structural scores with info derived from PSI-PRED.

Member Function Documentation

void copy ( const Ss2 & orig )

virtual

Copy orig object to this object ("deep copy").

Parameters

orig

Ss2 * newCopy ( )

virtual

Construct a new "deep copy" of this object.

Implements Structure.

virtual

Calculate structural scores to create matrix values.

Parameters

i
j

Implements Structure.

The documentation for this class was generated from the following files: