Here is a list of all documented struct and union fields with links to the struct/union documentation for each field:

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• operator const string &() : Identity
• operator long() : Identity
• operator<() : ranking_helper2 , ranking_helper
• operator<< : ProfInput , PssmInput , Ss2Input , SubMatrix , Substitution , ThreadingInput
• operator=() : AGPFunction , Align , Alignment , AlignmentBase , AlignmentData , AtchleyCorrelation , AtchleyDistance , CrossProduct , DotPFreq , DotPOdds , EDistance , FSAlign , GapFunction , HenikoffProfile , JensenShannon , LogAverage , NWAlign , NWAlignNoTermGaps , Panchenko , Pearson , Prof , Profile , ProfInput , PSICProfile , PssmInput , ScoringFunction , ScoringP2P , ScoringP2S , ScoringS2S , ScoringScheme , Sec , SecSequenceData , SeqDivergenceProfile , SequenceData , Ss2 , Ss2Input , Structure , SubMatrix , Substitution , SWAlign , Threading , ThreadingInput , ThreadingProf , ThreadingSs2 , Traceback , VGPFunction2 , VGPFunction , Zhou , AminoAcid , Identity , Ligand , Nucleotide , Spacer , LoopTable , LoopTableEntry , RamachandranData , ranking_helper2 , ranking_helper , VectorTransformation
• operator== : Traceback , Identity
• operator>> : ProfInput , PssmInput , Ss2Input , SubMatrix , Substitution , ThreadingInput
• operator[]() : LoopTable , LoopTableEntry
• outputArray() : globalStatistic
• outputMatch() : AlignmentData , SecSequenceData , SequenceData
• outputMultiMatch() : Align