ThreadingSs2 Class Reference

Calculate structural scores with info derived from threading and PSI-PRED. More...

Inheritance diagram for ThreadingSs2:

Collaboration diagram for ThreadingSs2:

Public Member Functions
	ThreadingSs2 (SubMatrix *subStr, AlignmentData *ad, ThreadingInput *thread, Ss2Input *psipred1, Ss2Input *psipred2, double cThr, double cSs2)
	Default constructor. More...
	ThreadingSs2 (const ThreadingSs2 &orig)
	Copy constructor.
virtual	~ThreadingSs2 ()
	Destructor.
virtual void	copy (const ThreadingSs2 &orig)
	Copy orig object to this object ("deep copy"). More...
virtual void	copy (const Structure &orig)
	Copy orig object to this object ("deep copy").
virtual ThreadingSs2 *	newCopy ()
	Construct a new "deep copy" of this object.
ThreadingSs2 &	operator= (const ThreadingSs2 &orig)
	Assignment operator.
virtual void	reverse ()
	Reverse template structural components.
virtual double	scoringStr (int i, int j)
	Calculate structural scores to create matrix values. More...

Data Fields
SubMatrix *	subStr
	Structural substitution matrix.

Detailed Description

Calculate structural scores with info derived from threading and PSI-PRED.

Constructor & Destructor Documentation

ThreadingSs2	(	SubMatrix *	subStr,
		AlignmentData *	ad,
		ThreadingInput *	thread,
		Ss2Input *	psipred1,
		Ss2Input *	psipred2,
		double	cThr,
		double	cSs2
	)

Default constructor.

Parameters

subStr
ad
thread
psipred1
psipred2
cThr
cSs2

Member Function Documentation

void copy ( const ThreadingSs2 &  orig )

virtual

Copy orig object to this object ("deep copy").

Parameters

orig

double scoringStr ( int  i, int  j  )

virtual

Calculate structural scores to create matrix values.

Parameters

i
j

Returns

Implements Structure.

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The documentation for this class was generated from the following files:

• Align2/Sources/ThreadingSs2.h
• Align2/Sources/ThreadingSs2.cc