Zhou Class Reference

Calculate scores for profile to profile alignment using Zhou-Zhou method. More...

Inheritance diagram for Zhou:

Collaboration diagram for Zhou:

Public Member Functions
	Zhou (Profile *pro1, PssmInput *pssm2)
	Default constructor. More...
	Zhou (const Zhou &orig)
	Copy constructor.
virtual	~Zhou ()
	Destructor.
virtual void	copy (const ScoringFunction &orig)
	Copy orig object to this object ("deep copy").
virtual void	copy (const Zhou &orig)
	Copy orig object to this object ("deep copy"). More...
virtual Zhou *	newCopy ()
	Construct a new "deep copy" of this object. More...
Zhou &	operator= (const Zhou &orig)
	Assignment operator.
virtual double	scoringSeq (int i, int j)
	Calculate scores to create matrix values. More...

Detailed Description

Calculate scores for profile to profile alignment using Zhou-Zhou method.

Some explanations can be found in:

          Zhou H., Zhou Y.
          Single-body residue-level knowledge-based energy score
          combined with sequence-profile and secondary structure
          information for fold recognition.
          Proteins. 2004 Jun 1;55(4):1005-13.
          PMID: 15146497 [PubMed - indexed for MEDLINE]

Constructor & Destructor Documentation

Zhou	(	Profile *	pro1,
		PssmInput *	pssm2
	)

Default constructor.

Parameters

pro1
pssm2

Member Function Documentation

void copy ( const Zhou &  orig )

virtual

Copy orig object to this object ("deep copy").

Parameters

orig

Zhou * newCopy ( )

virtual

Construct a new "deep copy" of this object.

Returns

Implements ScoringFunction.

double scoringSeq ( int  i, int  j  )

virtual

Calculate scores to create matrix values.

Parameters

i
j

Returns

Implements ScoringFunction.

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The documentation for this class was generated from the following files:

• Align2/Sources/Zhou.h
• Align2/Sources/Zhou.cc