Calculate structural scores with info derived from threading. More...

Inheritance diagram for Threading:

Collaboration diagram for Threading:

Public Member Functions
	Threading (AlignmentData ad, ThreadingInput thread, double cThr)
	Default constructor.

	Threading (const Threading &orig)
	Copy constructor.

virtual	~Threading ()
	Destructor.

virtual void	copy (const Threading &orig)
	Copy orig object to this object ("deep copy"). More...

virtual void	copy (const Structure &orig)
	Copy orig object to this object ("deep copy").

virtual Threading *	newCopy ()
	Construct a new "deep copy" of this object.

Threading &	operator= (const Threading &orig)
	Assignment operator. More...

virtual void	reverse ()
	Reverse template structural components.

virtual double	scoringStr (int i, int j)
	Calculate structural scores to create matrix values. More...

Data Fields
SubMatrix *	subStr
	Structural substitution matrix.

Detailed Description

Calculate structural scores with info derived from threading.

Member Function Documentation

void copy ( const Threading & orig )

virtual

Copy orig object to this object ("deep copy").

Parameters

orig

Threading & operator= ( const Threading & orig )

Assignment operator.

Parameters

orig

virtual

Calculate structural scores to create matrix values.

Parameters

i
j

Implements Structure.

The documentation for this class was generated from the following files: