Saves components (Atoms, Groups, etc.) in carthesian format. More...

Inheritance diagram for XyzSaver:

Collaboration diagram for XyzSaver:

Protected Member Functions
virtual void	pSaveAtomVector (vector< Atom > &va)

Detailed Description

Saves components (Atoms, Groups, etc.) in carthesian format.

Internal format is made of type, coords & bonds of each atom, one per line. Keywords "aminoacid" and "sidechain" delimit these structures.

Member Function Documentation

void pSaveAtomVector ( vector< Atom > & va )

protectedvirtual

Creates a list of the atom types contained in the vector and saves it.

Parameters

reference to the vector that contains atoms(vector<Atom>&)

void saveAminoAcid ( AminoAcid & aa )

virtual

Obtains the atom and the said chain from the given amino acid and saves them as a vector format.

Parameters

Amino acid reference(AminoAcid&)

Reimplemented from Saver.

void saveGroup ( Group & gr )

virtual

Obtains the atom from the given group and saves it as a vector format.

Parameters

Group reference(Group&)

Reimplemented from Saver.

void saveSideChain ( SideChain & sc )

virtual

Obtains the atom from the given side chain and saves it as a vector format.

Parameters

Side	chain reference(SideChain&)

Reimplemented from Saver.

void saveSpacer ( Spacer & sp )

virtual

Obtains the atoms and side chains from each of the amino acids in the spacer/protein and saves them as a vector format.

Parameters

Spacer reference(Spacer&)

Reimplemented from Saver.

The documentation for this class was generated from the following files: