New pages
- 15:50, 10 October 2014 Documentation (hist) [3,244 bytes] Damiano (Talk | contribs) (Created page with "This page is dedicated to developers of new tools and people involved in the Victor maintenance. = Doxygen = The Doxygen documentation provides a comprehensive view of the V...")
- 14:57, 19 August 2014 Align (hist) [0 bytes] Damiano (Talk | contribs) (Created page with " Supposing you have already found a template candidate, you need to align it against your target sequence. The '''subali''' application let you choose from very different typ...")
- 20:09, 18 August 2014 AlignTest (hist) [6,511 bytes] Layla (Talk | contribs) (Created page with "A simple program to test the basic alignment features. #include <ScoringS2S.h> #include <NWAlign.h> #include <FSAlign.h> #include <SWAlign.h> #include <SubMatrix.h> #in...")
- 16:33, 18 August 2014 Applications (hist) [1,834 bytes] Damiano (Talk | contribs) (Created page with "{| cellpadding="20" cellspacing="0" border="1" |Align | |- |Ring | |- |TAP | |- |QMEAN | |- |Homer | |- |LOBO | |- |FRST | |}")
- 16:04, 18 August 2014 References (hist) [1,384 bytes] Damiano (Talk | contribs) (Created page with "TAP score: Torsion angle propensity normalization applied to local protein structure evaluation Tosatto, S.C.E ., Battistutta, R. (2007) BMC Bioinformatics, 8, art. no. 155....")
- 10:45, 16 July 2014 LoopTablePlot example (hist) [1,243 bytes] Layla (Talk | contribs) (Created page with "File:Example.jpg")
- 10:26, 16 July 2014 LoboLUT all example (hist) [744 bytes] Layla (Talk | contribs) (Created page with "Remember that as shown in [[Features#Lobo|previous section] the LUtables are created recursively. So the first created is always the smallest one. ./loboLUT_all -c 5 The pr...")
- 10:12, 16 July 2014 LoboLUT example (hist) [691 bytes] Layla (Talk | contribs) (Created page with "All the data for the Victor library is inside the project folder under "data", and this is the default path to the LUT tables. To create the LUT table of length 2 inside the...")
- 17:30, 15 July 2014 Pdb2tap example (hist) [1,129 bytes] Layla (Talk | contribs) (Created page with "./pdb2tap -i ../samples/102M.pdb -c A 0.8299 ./pdb2tap -i ../samples/1A3W.pdb -P sal --allchains 0.7182 layla@layla-nera:~/victor2.0/bin$ ./pdb2tap -i ../samples/1IHQ....")
- 17:22, 15 July 2014 Frst example (hist) [1,004 bytes] Layla (Talk | contribs) (Created page with "To calculate the frst value using one pdb ./frst -i ../samples/16PK.pdb The printed value would be: -69748.8752 Its possible to calculate the frst value for a set of PDB...")
- 16:18, 15 July 2014 Pdb2torenergy example (hist) [1,395 bytes] Layla (Talk | contribs) (Created page with "Trying with a PDB file that contains more than one chain ./pdb2torenergy -i ../samples/2FGW.pdb --allchains -p The output would be as shown: 1 0.000000 (first...")
