User contributions
(newest | oldest) View (newer 100 | older 100) (20 | 50 | 100 | 250 | 500)
- 10:49, 16 July 2014 (diff | hist) . . (+62) . . N File:Example.jpg (Generic loop representation relative to some arbitrary origin.) (current)
- 10:47, 16 July 2014 (diff | hist) . . (+62) . . N File:Loboanguledot.jpeg (Generic loop representation relative to some arbitrary origin.) (current)
- 10:45, 16 July 2014 (diff | hist) . . (+20) . . N LoopTablePlot example (Created page with "File:Example.jpg")
- 10:26, 16 July 2014 (diff | hist) . . (+748) . . N LoboLUT all example (Created page with "Remember that as shown in [[Features#Lobo|previous section] the LUtables are created recursively. So the first created is always the smallest one. ./loboLUT_all -c 5 The pr...")
- 10:16, 16 July 2014 (diff | hist) . . (-1) . . LoboLUT example (current)
- 10:16, 16 July 2014 (diff | hist) . . (-1) . . Features (→How to create a LUT for a fragment of size N)
- 10:13, 16 July 2014 (diff | hist) . . (-12) . . m LoboLUT example
- 10:13, 16 July 2014 (diff | hist) . . (+70) . . m LoboLUT example
- 10:12, 16 July 2014 (diff | hist) . . (+634) . . N LoboLUT example (Created page with "All the data for the Victor library is inside the project folder under "data", and this is the default path to the LUT tables. To create the LUT table of length 2 inside the...")
- 10:03, 16 July 2014 (diff | hist) . . (+12) . . m Features (→How to create a LUT)
- 09:55, 16 July 2014 (diff | hist) . . (+13) . . m Energy (current)
- 09:54, 16 July 2014 (diff | hist) . . (+331) . . Pdb2tap example (current)
- 09:38, 16 July 2014 (diff | hist) . . (+1) . . m Features
- 09:37, 16 July 2014 (diff | hist) . . (+12) . . m Features
- 17:34, 15 July 2014 (diff | hist) . . (+49) . . m Energy
- 17:34, 15 July 2014 (diff | hist) . . (-5) . . m Features (→How to obtain TAP value from a PDB)
- 17:33, 15 July 2014 (diff | hist) . . (+2) . . m Features (→How to obtain TAP value from a PDB)
- 17:33, 15 July 2014 (diff | hist) . . (+7) . . m Features (→How to obtain TAP value from a PDB)
- 17:32, 15 July 2014 (diff | hist) . . (+35) . . m Features (→How to obtain TAP value from a PDB)
- 17:30, 15 July 2014 (diff | hist) . . (+798) . . N Pdb2tap example (Created page with "./pdb2tap -i ../samples/102M.pdb -c A 0.8299 ./pdb2tap -i ../samples/1A3W.pdb -P sal --allchains 0.7182 layla@layla-nera:~/victor2.0/bin$ ./pdb2tap -i ../samples/1IHQ....")
- 17:23, 15 July 2014 (diff | hist) . . (-18) . . m Frst example (current)
- 17:22, 15 July 2014 (diff | hist) . . (+1,022) . . N Frst example (Created page with "To calculate the frst value using one pdb ./frst -i ../samples/16PK.pdb The printed value would be: -69748.8752 Its possible to calculate the frst value for a set of PDB...")
- 17:15, 15 July 2014 (diff | hist) . . (+23) . . m Features (→How to obtain FRST value from a PDB)
- 16:44, 15 July 2014 (diff | hist) . . (+5) . . m Pdb2torenergy example (current)
- 16:43, 15 July 2014 (diff | hist) . . (+674) . . m Pdb2torenergy example
- 16:18, 15 July 2014 (diff | hist) . . (+716) . . N Pdb2torenergy example (Created page with "Trying with a PDB file that contains more than one chain ./pdb2torenergy -i ../samples/2FGW.pdb --allchains -p The output would be as shown: 1 0.000000 (first...")
- 16:02, 15 July 2014 (diff | hist) . . (+13) . . m Energy (→How to obtain normalized energy from a PDB)
- 15:07, 15 July 2014 (diff | hist) . . (+704) . . m Energy
- 15:04, 15 July 2014 (diff | hist) . . (-9) . . m Victor
- 15:03, 15 July 2014 (diff | hist) . . (+54) . . Introduction
- 15:03, 15 July 2014 (diff | hist) . . (+40) . . Introduction (→LOop Build-up and Optimization (Lobo))
- 15:02, 15 July 2014 (diff | hist) . . (+50) . . m Introduction
- 14:22, 14 July 2014 (diff | hist) . . (+9) . . m Tutorial (→LOop Build-up and Optimization)
- 14:21, 14 July 2014 (diff | hist) . . (+9) . . m Tutorial (→Energy functions implementation)
- 14:19, 14 July 2014 (diff | hist) . . (-4) . . m Victor
- 14:18, 14 July 2014 (diff | hist) . . (0) . . m Victor
- 14:17, 14 July 2014 (diff | hist) . . (+13) . . m Victor
- 12:29, 9 July 2014 (diff | hist) . . (+9) . . Features (→How to obtain normalized energy from a PDB)
- 12:26, 9 July 2014 (diff | hist) . . (+1) . . Features (→How to obtain normalized energy from a PDB)
- 12:26, 9 July 2014 (diff | hist) . . (+9) . . Features (→How to obtain normalized energy from a PDB)
- 12:25, 9 July 2014 (diff | hist) . . (-8) . . Features (→How to obtain normalized energy from a PDB)
- 12:25, 9 July 2014 (diff | hist) . . (-7) . . Features (→How to obtain normalized energy from a PDB)
- 12:24, 9 July 2014 (diff | hist) . . (0) . . Features (→How to obtain normalized energy from a PDB)
- 12:23, 9 July 2014 (diff | hist) . . (+9) . . Features (→How to obtain normalized energy from a PDB)
- 12:22, 9 July 2014 (diff | hist) . . (+66) . . Features (→How to obtain normalized energy from a PDB)
- 12:14, 9 July 2014 (diff | hist) . . (+622) . . Features
- 12:10, 9 July 2014 (diff | hist) . . (+2) . . Victor
- 12:09, 9 July 2014 (diff | hist) . . (+126) . . m Victor
- 12:08, 9 July 2014 (diff | hist) . . (-171) . . m Victor
- 12:07, 9 July 2014 (diff | hist) . . (+36) . . m Victor
- 12:06, 9 July 2014 (diff | hist) . . (+4) . . Victor
- 12:05, 9 July 2014 (diff | hist) . . (+7) . . Victor
- 11:59, 9 July 2014 (diff | hist) . . (-1,243) . . Victor
- 11:54, 9 July 2014 (diff | hist) . . (+1) . . Features (→How to obtain the torsion angles from the PDB residues)
- 11:53, 9 July 2014 (diff | hist) . . (+17) . . m Features (→How to obtain the torsion angles from the PDB residues)
- 11:52, 9 July 2014 (diff | hist) . . (+26) . . m Features (→How to obtain the solvation potential)
- 11:51, 9 July 2014 (diff | hist) . . (0) . . m Features (→How to obtain the solvation potential)
- 11:50, 9 July 2014 (diff | hist) . . (+237) . . Pdb2solv example (current)
- 11:46, 9 July 2014 (diff | hist) . . (-631) . . m Features (→How to obtain the solvation potential)
- 11:45, 9 July 2014 (diff | hist) . . (+1,293) . . N Pdb2solv example (Created page with " '''Non polar option''' --------------------------------------------------------------------------------------------------------------- total quantity of residues evaluate...")
- 11:44, 9 July 2014 (diff | hist) . . (+49) . . Features (→How to obtain the solvation potential)
- 11:40, 9 July 2014 (diff | hist) . . (-23) . . Pdb2tor example (current)
- 11:39, 9 July 2014 (diff | hist) . . (+1) . . Pdb2tor example
- 11:38, 9 July 2014 (diff | hist) . . (-1) . . Pdb2tor example
- 11:35, 9 July 2014 (diff | hist) . . (+23) . . Pdb2tor example
- 11:34, 9 July 2014 (diff | hist) . . (+1,809) . . N Pdb2tor example (Created page with " A possible filelist2_ file could contain ../samples/2R8O.pdb A ../samples/3VB5.pdb B ../samples/4JDG.pdb A ../samples/102M.pdb A And if we are trying to get the phi, psi...")
- 11:34, 9 July 2014 (diff | hist) . . (-1,762) . . Features (→How to obtain the torsion angles from the PDB residues)
- 11:32, 9 July 2014 (diff | hist) . . (+1,876) . . Features (→How to obtain the torsion angles from the PDB residues)
- 10:59, 9 July 2014 (diff | hist) . . (+633) . . Features (→How to obtain the solvation potential)
- 10:37, 9 July 2014 (diff | hist) . . (+399) . . m Features
- 10:24, 9 July 2014 (diff | hist) . . (+19) . . m Features (→How to obtain the solvation potential)
- 10:23, 9 July 2014 (diff | hist) . . (+6) . . m Features (→How to obtain the solvation potential)
- 10:22, 9 July 2014 (diff | hist) . . (+1) . . m Features (→How to obtain the solvation potential)
- 10:21, 9 July 2014 (diff | hist) . . (-6) . . m Features (→How to obtain the solvation potential)
- 10:21, 9 July 2014 (diff | hist) . . (+1) . . m Features (→How to obtain the solvation potential)
- 10:20, 9 July 2014 (diff | hist) . . (+14) . . Features (→Energy)
- 10:20, 9 July 2014 (diff | hist) . . (+18) . . m Features (→How to obtain the solvation potential)
- 10:18, 9 July 2014 (diff | hist) . . (+18) . . m Features (→How to obtain the solvation potential)
- 10:14, 9 July 2014 (diff | hist) . . (-107) . . m Introduction
- 10:13, 9 July 2014 (diff | hist) . . (-9) . . m Introduction
- 10:13, 9 July 2014 (diff | hist) . . (+489) . . m Introduction
- 10:09, 9 July 2014 (diff | hist) . . (+3,181) . . N Biopool (Created page with "= Biopool library = The Biopool class implementation follows the [http://en.wikipedia.org/wiki/Composite_pattern composite design pattern ] and for a complete description of...") (current)
- 10:08, 9 July 2014 (diff | hist) . . (-11) . . Victor
- 10:04, 9 July 2014 (diff | hist) . . (+90) . . m Introduction (→LOop Build-up and Optimization (Lobo))
- 09:58, 9 July 2014 (diff | hist) . . (+90) . . m Introduction (→Energy functions implementation)
- 09:47, 9 July 2014 (diff | hist) . . (+60) . . m Introduction
- 09:44, 9 July 2014 (diff | hist) . . (-4) . . Detailed Installation (current)
- 10:41, 8 July 2014 (diff | hist) . . (+1) . . m Victor
- 10:37, 8 July 2014 (diff | hist) . . (+11) . . m Features
- 10:36, 8 July 2014 (diff | hist) . . (-106) . . m Features
- 10:36, 8 July 2014 (diff | hist) . . (+3,277) . . m Features
- 10:35, 8 July 2014 (diff | hist) . . (+30) . . Victor
- 10:34, 8 July 2014 (diff | hist) . . (-31) . . m Victor
- 10:32, 8 July 2014 (diff | hist) . . (+1,192) . . Victor
- 10:31, 8 July 2014 (diff | hist) . . (+582) . . Victor
- 10:28, 8 July 2014 (diff | hist) . . (+348) . . m Victor
- 10:26, 8 July 2014 (diff | hist) . . (+1) . . m Victor
- 10:25, 8 July 2014 (diff | hist) . . (-42) . . Features
- 10:22, 8 July 2014 (diff | hist) . . (+7,426) . . Features
- 10:21, 8 July 2014 (diff | hist) . . (+8,902) . . N Features (Created page with "All the applications are in the bin folder, in there you will find a set of programs ready to use, all of them have the -h option, that shows which are the possible options to...")
(newest | oldest) View (newer 100 | older 100) (20 | 50 | 100 | 250 | 500)
