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Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust.
Benkert P., Tosatto S. C. E., Schwede T.
(2009) Proteins 77 (Suppl 9):173-180.

TAP score: Torsion angle propensity normalization applied to local protein structure evaluation
Tosatto, S.C.E ., Battistutta, R.
(2007) BMC Bioinformatics, 8, art. no. 155.

Metodologie profilo-profilo per l’allineamento di sequenze proteiche.
Negri E.
(2007/2008) Padua@thesis,

Align: a C++ Class Library and Web Server for Rapid Sequence Alignment Prototyping
Silvio C.E. Tosatto, Alessandro Albiero, Alessandra Mantovan, Carlo Ferrari, Eckart Bindewald and Stefano Toppo Pages 167-173 (7)
(2006) Current Drug Discovery Technologies. 3(3), pp. 167-73.

Fine-grained statistical torsion angle potentials are effective in discriminating native protein structures
Albiero, A ., Tosatto, S.C.E.
(2006) Current Drug Discovery Technologies, 3 (1), pp. 75-81.

Large-Scale Prediction of Protein Structure and Function from Sequence.
Tosatto S. C. E., Toppo S.
(2006) Current Pharmaceutical Design, 12, 2067-2086.

The Victor/FRST function for model quality estimation
Tosatto, S.C.E.
(2005) Journal of Computational Biology, 12 (10), pp. 1316-1327.

Allineamenti inversi e selezione energetica di strutture proteiche. Tesi,
Albiero A.
(2004/2005) Università degli Studi di Padova.

A divide and conquer approach to fast loop modeling
Tosatto, S.C.E ., Bindewald, E ., Hesser, J ., Männer, R.
(2002) Protein Engineering, 15 (4), pp. 279-286.

Protein secondary structure prediction based on position-specific scoring matrices.
Jones D.T.
(1999) Journal of Molecular Biology 292(2):195-202.

Position-based sequence weights.
Henikoff S., Henikoff J.G.
(1994) Journal of Molecular Biology 243:574-578