Difference between revisions of "References"
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| + | Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust. | ||
| + | <br>Benkert P., Tosatto S. C. E., Schwede T. | ||
| + | <br>(2009) '''Proteins 77 '''(Suppl 9):173-180. | ||
| + | |||
TAP score: Torsion angle propensity normalization applied to local protein structure evaluation | TAP score: Torsion angle propensity normalization applied to local protein structure evaluation | ||
<br>Tosatto, S.C.E ., Battistutta, R. | <br>Tosatto, S.C.E ., Battistutta, R. | ||
<br>(2007) '''BMC Bioinformatics''', 8, art. no. 155. | <br>(2007) '''BMC Bioinformatics''', 8, art. no. 155. | ||
| + | |||
| + | Metodologie profilo-profilo per l’allineamento di sequenze proteiche. | ||
| + | <br>Negri E. | ||
| + | <br>(2007/2008) Padua@thesis, http://tesi.cab.unipd.it/. | ||
Align: a C++ Class Library and Web Server for Rapid Sequence Alignment Prototyping | Align: a C++ Class Library and Web Server for Rapid Sequence Alignment Prototyping | ||
| Line 10: | Line 18: | ||
<br>Albiero, A ., Tosatto, S.C.E. | <br>Albiero, A ., Tosatto, S.C.E. | ||
<br>(2006) '''Current Drug Discovery Technologies''', 3 (1), pp. 75-81. | <br>(2006) '''Current Drug Discovery Technologies''', 3 (1), pp. 75-81. | ||
| + | |||
| + | Large-Scale Prediction of Protein Structure and Function from Sequence. | ||
| + | <br>Tosatto S. C. E., Toppo S. | ||
| + | <br>(2006) '''Current Pharmaceutical Design''', 12, 2067-2086. | ||
The Victor/FRST function for model quality estimation | The Victor/FRST function for model quality estimation | ||
<br>Tosatto, S.C.E. | <br>Tosatto, S.C.E. | ||
<br>(2005) '''Journal of Computational Biology''', 12 (10), pp. 1316-1327. | <br>(2005) '''Journal of Computational Biology''', 12 (10), pp. 1316-1327. | ||
| + | |||
| + | Allineamenti inversi e selezione energetica di strutture proteiche. Tesi, | ||
| + | <br>Albiero A. | ||
| + | <br>(2004/2005) Università degli Studi di Padova. | ||
A divide and conquer approach to fast loop modeling | A divide and conquer approach to fast loop modeling | ||
<br>Tosatto, S.C.E ., Bindewald, E ., Hesser, J ., Männer, R. | <br>Tosatto, S.C.E ., Bindewald, E ., Hesser, J ., Männer, R. | ||
<br>(2002) '''Protein Engineering''', 15 (4), pp. 279-286. | <br>(2002) '''Protein Engineering''', 15 (4), pp. 279-286. | ||
| + | |||
| + | Protein secondary structure prediction based on position-specific scoring matrices. | ||
| + | <br>Jones D.T. | ||
| + | <br>(1999) '''Journal of Molecular Biology''' 292(2):195-202. | ||
| + | |||
| + | Position-based sequence weights. | ||
| + | <br>Henikoff S., Henikoff J.G. | ||
| + | <br>(1994) '''Journal of Molecular Biology''' 243:574-578 | ||
Revision as of 11:43, 19 August 2014
Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust.
Benkert P., Tosatto S. C. E., Schwede T.
(2009) Proteins 77 (Suppl 9):173-180.
TAP score: Torsion angle propensity normalization applied to local protein structure evaluation
Tosatto, S.C.E ., Battistutta, R.
(2007) BMC Bioinformatics, 8, art. no. 155.
Metodologie profilo-profilo per l’allineamento di sequenze proteiche.
Negri E.
(2007/2008) Padua@thesis, http://tesi.cab.unipd.it/.
Align: a C++ Class Library and Web Server for Rapid Sequence Alignment Prototyping
Silvio C.E. Tosatto, Alessandro Albiero, Alessandra Mantovan, Carlo Ferrari, Eckart Bindewald and Stefano Toppo Pages 167-173 (7)
(2006) Current Drug Discovery Technologies. 3(3), pp. 167-73.
Fine-grained statistical torsion angle potentials are effective in discriminating native protein structures
Albiero, A ., Tosatto, S.C.E.
(2006) Current Drug Discovery Technologies, 3 (1), pp. 75-81.
Large-Scale Prediction of Protein Structure and Function from Sequence.
Tosatto S. C. E., Toppo S.
(2006) Current Pharmaceutical Design, 12, 2067-2086.
The Victor/FRST function for model quality estimation
Tosatto, S.C.E.
(2005) Journal of Computational Biology, 12 (10), pp. 1316-1327.
Allineamenti inversi e selezione energetica di strutture proteiche. Tesi,
Albiero A.
(2004/2005) Università degli Studi di Padova.
A divide and conquer approach to fast loop modeling
Tosatto, S.C.E ., Bindewald, E ., Hesser, J ., Männer, R.
(2002) Protein Engineering, 15 (4), pp. 279-286.
Protein secondary structure prediction based on position-specific scoring matrices.
Jones D.T.
(1999) Journal of Molecular Biology 292(2):195-202.
Position-based sequence weights.
Henikoff S., Henikoff J.G.
(1994) Journal of Molecular Biology 243:574-578
