ALIGN: Pairwise Alignment

Version 2.0



General Informations
E-Mail address Name of alignment (optional)
E-mail notification of results
Sequences
Target (FASTA format)

- OR - Upload a FASTA file:

Template (FASTA format)

- OR -   Upload a FASTA file:

Select a valid PDB ID: - OR - Upload a file:
Alignment options
Alignment type
Weighting scheme
Scoring Function
Alignment algorithm
Sub-optimal alignments
Substitution Matrix
Gap function
Gap open
Gap extension
Weight for helical content
Weight for strand content
Weight for solvent accessibility
Weight for backbone straightness
Weight for space proximity
Structural information
Coefficient for sequence alignment
Coefficient for structural alignent